| wiew.cgi?COG2165 | 88 proteins | NU | COG2165 | Type II secretory pathway, pseudopilin PulG | Help |
|---|---|---|---|---|---|
| 2 from | query genome Listeria innocua (Bacillales | Bacilli) | ||||
| lin1380 lin1381 | |||||
140 letters (r) 0 0 567 = ||| 1 lin1381 (140) = 3 2 92 = ||| 2 SA1371 (144) = 892 147
64 _ |255 CAC3142 (1182) COG0086 68 3 62 _ 7 b2657 (210) COG0366 1 27 61 = 255 hofH (169) = 6 -17 59 = 105 RSp0141 (129) = 439 492 59 _ 255 YKR086w (1071) COG1643 BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= lin1381 (140 letters) Database: myva 192,987 sequences; 59,019,183 total letters Score E Sequences producing significant alignments: (bits) Value lin1381 223 1e-58 SA1371 40 0.002 CAC3142 29 2.7 b2657 28 4.6 hofH 28 5.7 RSp0141 27 9.2 YKR086w 27 9.8
# >lin1381 # Length = 140 # # Score = 223 bits (567), Expect = 1e-58 # Identities = 140/140 (100%), Positives = 140/140 (100%) # # Query: 1 MKKNAFTLLEMLLVISISLTMITLTIYPIANTITALTEKQLLEEVKAAIYLAQINAITSK 60 # MKKNAFTLLEMLLVISISLTMITLTIYPIANTITALTEKQLLEEVKAAIYLAQINAITSK # Sbjct: 1 MKKNAFTLLEMLLVISISLTMITLTIYPIANTITALTEKQLLEEVKAAIYLAQINAITSK 60 # # Query: 61 QDTTISFIPNENQFIATYNNQPLITIPFGTTLSLQQTKTENYRFSSLDGTINRFSTIHLS 120 # QDTTISFIPNENQFIATYNNQPLITIPFGTTLSLQQTKTENYRFSSLDGTINRFSTIHLS # Sbjct: 61 QDTTISFIPNENQFIATYNNQPLITIPFGTTLSLQQTKTENYRFSSLDGTINRFSTIHLS 120 # # Query: 121 GTNKNYKLIFQIGKGRFRVE 140 # GTNKNYKLIFQIGKGRFRVE # Sbjct: 121 GTNKNYKLIFQIGKGRFRVE 140 # # # >SA1371 # Length = 144 # # Score = 40.0 bits (92), Expect = 0.002 # Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 9/143 (6%) # # Query: 2 KKNAFTLLEMLLV---ISISLTMITLTIYPIANTITALTEKQLLEEVKAAIYLAQINAIT 58 # K++AFT++EML+V ISI L ++T+T ++N E ++ + Y+ AI # Sbjct: 5 KQSAFTMIEMLVVMMLISIFL-LLTMTSKGLSNLRVIDDEANIISFITELNYIKS-QAIA 62 # # Query: 59 SKQDTTISFIPNENQFIATYNNQ-PLITIPFGTTLSLQQTKTENYRFSSLDGTINRFSTI 117 # ++ + F N + NN+ + + G +++ + + G IN+F +I # Sbjct: 63 NQGYINVRFYENSDTIKVIENNKIRFLKLKVGKIINVAKVDIIAF---DKKGNINKFGSI 119 # # Query: 118 HLSGTNKNYKLIFQIGKGRFRVE 140 # + N Y++IF I KGR R E # Sbjct: 120 TIDNNNSIYRIIFHIEKGRIRYE 142 # # # >CAC3142 # Length = 1182 # # Score = 29.3 bits (64), Expect = 2.7 # Identities = 19/58 (32%), Positives = 31/58 (52%), Gaps = 3/58 (5%) # # Query: 74 FIATYNNQPL-ITIPFGTTLSLQQTKTENYRFSSLDGTINRFSTIHLSGTN--KNYKL 128 # FIAT + + + IPFG++L ++ +T +G++N I + G N KNY L # Sbjct: 966 FIATESGEEVSYDIPFGSSLKVKNGETIGAGDEITEGSVNPHDIIRIKGVNAVKNYLL 1023 # # # >b2657 # Length = 210 # # Score = 28.5 bits (62), Expect = 4.6 # Identities = 18/79 (22%), Positives = 39/79 (48%), Gaps = 1/79 (1%) # # Query: 2 KKNAFTLLEMLLVISISLTMITLTIYPIANTITALTEKQLLEEVKAAIYLAQINAITSKQ 61 # KK +E L+ + ++ +Y + ++A+ L++ +KA + + + SK # Sbjct: 70 KKAVMNYMEYLVTCQLDEQQMSSLLYE-RDDLSAIDFSLLMKTIKAFSFGGDLQTLASKP 128 # # Query: 62 DTTISFIPNENQFIATYNN 80 # +TIS IP+E + + N+ # Sbjct: 129 GSTISSIPSERRILININH 147 # # # >hofH # Length = 169 # # Score = 28.1 bits (61), Expect = 5.7 # Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%) # # Query: 2 KKNAFTLLEMLLVISISLTMITLTIYPIANTITALTE-KQLLEEVKAAIYLAQINAITSK 60 # ++ FTLLEM+LV+++ ++ ++ A T ++ AA+ LA A S # Sbjct: 3 QQRGFTLLEMMLVLALVAITASVVLFTYGREDVASTRARETAARFTAALELAIDRATLSG 62 # # Query: 61 QDTTISF 67 # Q I F # Sbjct: 63 QPVGIHF 69 # # # >RSp0141 # Length = 129 # # Score = 27.3 bits (59), Expect = 9.2 # Identities = 12/43 (27%), Positives = 28/43 (64%) # # Query: 4 NAFTLLEMLLVISISLTMITLTIYPIANTITALTEKQLLEEVK 46 # +AFTL+E+L+V++I ++T+ + +++ E L+E ++ # Sbjct: 10 SAFTLIELLVVLAIVAVLLTIAVPRYFSSVDRAKETVLVENLR 52 # # # >YKR086w # Length = 1071 # # Score = 27.3 bits (59), Expect = 9.8 # Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%) # # Query: 70 NENQFIATYNNQPLITIPFGTTLSLQQTKTENYRFSSLDGTINRFSTIHLSG-TNKNYKL 128 # N +F A + N P TIP G T +Q T N ++ +++ IHL+ + L # Sbjct: 509 NAKKFSAFFGNAPQFTIP-GRTFPVQTIYTSNPVQDYVEAAVSQAVKIHLANDCSSGDIL 567 # # Query: 129 IFQIGK 134 # IF G+ # Sbjct: 568 IFMTGQ 573 # # Database: myva Posted date: Sep 16, 2002 2:25 PM Number of letters in database: 59,019,183 Number of sequences in database: 192,987 Lambda K H 0.320 0.134 0.357 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,326,359 Number of Sequences: 192987 Number of extensions: 462097 Number of successful extensions: 1580 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 29 Number of HSP's that attempted gapping in prelim test: 1565 Number of HSP's gapped (non-prelim): 42 length of query: 140 length of database: 59,019,183 effective HSP length: 98 effective length of query: 42 effective length of database: 40,106,457 effective search space: 1684471194 effective search space used: 1684471194 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (27.3 bits) S2: 59 (27.3 bits)
Open the original version of this page.
Usablenet Assistive is a UsableNet product. Usablenet Assistive Main Page.