| wiew.cgi?COG2165 | 88 proteins | NU | COG2165 | Type II secretory pathway, pseudopilin PulG | Help |
|---|---|---|---|---|---|
| 4 from | query genome Escherichia coli K12 (Enterobacteriales | Gammaproteobacteria) | ||||
| gspI hofG hofH ppdA | |||||
138 letters (r) 0 0 608 = ||| 1 gspI (138) = -13 2 137 = || 4 PA3099 (129) = -13 -8 123 = || 5 VC2728 (117) = -10 -7 98 = | 4 CC0178 (123) = -4 1 90 = | 5 RSc3108 (135) = -21 -5 87 = ||| 4 YPO0811 (114) = -4 36 82 = 3 aq_2118 (173) = -13 35 73 = 57 TM1271 (157) = -4 70 72 _ | 8 NMA1107 (204) COG4967 -19 -29 70 = 4 SP2049 (86) = -13 105 70 _ || 42 PA3098 (237) COG4795 -9 -8 68 _ ||| 9 STM2997 (106) COG4967 -2 68 68 _ | 15 NMB0887 (204) COG4967 -5 35 67 _ ||255 PA4551 (185) COG4967 -11 71 66 _ |||255 YPO0810 (198) COG4795 920 118 66 _ |255 mlr2360 (1176) COG3523 987 271 64 _ |255 CC1604 (1398) COG2911 29 97 63 _ 255 alr0557_1 (270) COG0463 37 10 62 _ ||255 PA1009 (185) COG2716 -1 106 62 _ |255 RSp1290 (250) COG4966 228 199 62 _ |||255 ECs5117 (565) COG4232 228 199 62 _ |||255 ZdsbD (565) COG4232 -10 18 61 = ||104 VC2730 (146) = 269 96 61 _ |255 NMB1606 (505) COG0642 -3 71 61 _ ||255 PA0677 (213) COG4795 -1 54 61 _ ||255 VC0858 (184) COG4970 606 181 60 _ 255 SPAC16C9.06c (925) COG1112 -22 383 59 _ |||255 YPO0958 (499) COG1129 -12 69 59 _ |||255 gspJ (195) COG4795 BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gspI (138 letters) Database: myva 192,987 sequences; 59,019,183 total letters Score E Sequences producing significant alignments: (bits) Value gspI 238 2e-63 PA3099 57 1e-08 VC2728 52 4e-07 CC0178 42 3e-04 RSc3108 39 0.002 YPO0811 38 0.006 aq_2118 36 0.023 TM1271 33 0.21 NMA1107 32 0.29 SP2049 32 0.50 PA3098 32 0.53 STM2997 31 0.85 NMB0887 31 0.92 PA4551 30 1.0 YPO0810 30 1.4 mlr2360 30 1.7 CC1604 29 2.8 alr0557_1 29 3.1 PA1009 28 3.9 RSp1290 28 4.3 ECs5117 28 4.4 ZdsbD 28 4.4 VC2730 28 6.1 NMB1606 28 6.3 PA0677 28 6.3 VC0858 28 6.3 SPAC16C9.06c 28 6.6 YPO0958 27 9.0 gspJ 27 9.9
# >gspI # Length = 138 # # Score = 238 bits (608), Expect = 2e-63 # Identities = 138/138 (100%), Positives = 138/138 (100%) # # Query: 1 MAPGSNARQRYPPMNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLAL 60 # MAPGSNARQRYPPMNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLAL # Sbjct: 1 MAPGSNARQRYPPMNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLAL 60 # # Query: 61 WIADNQLQSQDSFGEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTT 120 # WIADNQLQSQDSFGEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTT # Sbjct: 61 WIADNQLQSQDSFGEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTT 120 # # Query: 121 SLTRYQSIDNKSGQAQDD 138 # SLTRYQSIDNKSGQAQDD # Sbjct: 121 SLTRYQSIDNKSGQAQDD 138 # # # >PA3099 # Length = 129 # # Score = 57.4 bits (137), Expect = 1e-08 # Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 6/93 (6%) # # Query: 14 MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSF 73 # M + G TLLEVL+A++IF VA +++S+ R+ ++TLA+WIADN+L # Sbjct: 1 MKRARGFTLLEVLVALAIFAMVAASVLSASARSLQNASRLEDKTLAMWIADNRLNELQL- 59 # # Query: 74 GEENTSSSGKEL----INGEEWNWRSDIHSSKD 102 # E+ SSG+ G W WR+ + S+ + # Sbjct: 60 -EQTPPSSGRNQGELEFAGRRWEWRTQVDSTAE 91 # # # >VC2728 # Length = 117 # # Score = 52.0 bits (123), Expect = 4e-07 # Identities = 29/110 (26%), Positives = 51/110 (46%) # # Query: 14 MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSF 73 # M + G TLLEVL+A++IF A++++ S+ N + + + A + DNQ+ # Sbjct: 1 MKSKRGFTLLEVLVALAIFATAAISVIRSVSQHINTVNYLEEKMFAAMVVDNQMAQVMLN 60 # # Query: 74 GEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTTSLT 123 # + + G E + G W W+ + D L ++V G T +T # Sbjct: 61 PQSLAAREGSEQMAGRTWYWKLSPVKTADNLLKAFDVSVATEKGATPVVT 110 # # # >CC0178 # Length = 123 # # Score = 42.4 bits (98), Expect = 3e-04 # Identities = 30/109 (27%), Positives = 55/109 (49%), Gaps = 2/109 (1%) # # Query: 12 PPMNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQ-LQSQ 70 # PP ++G TL+E+L+A++IF+ L L++ A R+++ LA + DN+ +++ # Sbjct: 2 PPKRSEAGFTLIELLVALAIFSLAVLALLNLAGENTRAGGRLQDRILAEVVLDNRAIEAV 61 # # Query: 71 DSFGEENTSS-SGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQ 118 # S SG E + G W W + + D ++L I V P+ + # Sbjct: 62 TSVMPPALGRVSGAERVAGRPWLWTRQVSRTDDPSILRVDIAVMSPNSR 110 # # # >RSc3108 # Length = 135 # # Score = 39.3 bits (90), Expect = 0.002 # Identities = 24/53 (45%), Positives = 33/53 (61%), Gaps = 2/53 (3%) # # Query: 16 KQSGMTLLEVLLAMSIFTAVALT-LMSSMQGQRNAIERMRNETLALWIADNQL 67 # ++ G TLLEVL+A++I AVALT M +M A E ++ LA W A+N L # Sbjct: 12 RRHGFTLLEVLVALTI-VAVALTATMRAMGSMTVASESLQTRMLATWSAENHL 63 # # # >YPO0811 # Length = 114 # # Score = 38.1 bits (87), Expect = 0.006 # Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%) # # Query: 22 LLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSFGEENTSS- 80 # +LEV++A++IF L++M + + I + ++ W+A+N L E T+ # Sbjct: 1 MLEVIIALTIFCIAGLSIMKIISERLRWINILEQRMISSWVAENVLTEIKILKIEQTNEW 60 # # Query: 81 -SGKELINGEEWNWRS 95 # G+E + G+ W W+S # Sbjct: 61 LMGQESMAGQLWYWQS 76 # # # >aq_2118 # Length = 173 # # Score = 36.2 bits (82), Expect = 0.023 # Identities = 23/78 (29%), Positives = 39/78 (49%), Gaps = 11/78 (14%) # # Query: 15 NKQSGMTLLEVLLAMSIFTAVALTLMSSMQ-------GQRNAIERMRNETLALWIADNQL 67 # N G TL+EVL+ ++I + V ++ S Q G + ER+++E L W +L # Sbjct: 11 NTFKGFTLVEVLITLAIISLVFSLILISFQRATFFTFGAKKEAERLKSEALLFW----EL 66 # # Query: 68 QSQDSFGEENTSSSGKEL 85 # Q + ++ + GKEL # Sbjct: 67 QRSLAGAKKLKINQGKEL 84 # # # >TM1271 # Length = 157 # # Score = 32.7 bits (73), Expect = 0.21 # Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 13/118 (11%) # # Query: 14 MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSF 73 # M K++G TL+E+L+ M+I A+ L+ + G A+ + R +A+ QL++ + # Sbjct: 1 MRKRAGFTLIELLIVMAIIAALMAVLIPTATG---AMRKARATRIAV-----QLRNLEQG 52 # # Query: 74 GEENTSSS--GKELINGEEW-NWRSDIHSSK--DGTLLERTITVTLPSGQTTSLTRYQ 126 # E+ ++ E ++G+ NWRS++ D T+L TL + T S T+ + # Sbjct: 53 IEQYLMATLPATEDVDGKTLTNWRSELQGKGFVDDTILTDPNLETLTTSATNSNTQIE 110 # # # >NMA1107 # Length = 204 # # Score = 32.3 bits (72), Expect = 0.29 # Identities = 18/54 (33%), Positives = 28/54 (51%) # # Query: 15 NKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQ 68 # N QSGM L+EVL+AM + T L L+S ++ +T+ I N ++ # Sbjct: 11 NPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLME 64 # # # >SP2049 # Length = 86 # # Score = 31.6 bits (70), Expect = 0.50 # Identities = 19/66 (28%), Positives = 35/66 (52%), Gaps = 4/66 (6%) # # Query: 20 MTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDSFGEENTS 79 # M LLE ++A++IF ++A L+ +Q R ++ + L +A LQ+ G+ S # Sbjct: 1 MILLEAVVALAIFASIATLLLGQIQKNRQEEAKILQKEEVLRVAKMALQT----GQNQVS 56 # # Query: 80 SSGKEL 85 # +G E+ # Sbjct: 57 INGVEI 62 # # # >PA3098 # Length = 237 # # Score = 31.6 bits (70), Expect = 0.53 # Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 7/54 (12%) # # Query: 14 MNKQSGMTLLEVLLAMSIFTAVAL-------TLMSSMQGQRNAIERMRNETLAL 60 # M Q G TLLE+L+A++IF +AL ++M + Q R +RMR A+ # Sbjct: 1 MRLQRGFTLLELLIAIAIFALLALATYRMFDSVMQTDQATRVQEQRMRELVRAM 54 # # # >STM2997 # Length = 106 # # Score = 30.8 bits (68), Expect = 0.85 # Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 15/112 (13%) # # Query: 13 PMNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQSQDS 72 # P+N Q G +L EVL+AM + + +T +S Q +R++ L +W Q + # Sbjct: 4 PLNLQRGFSLPEVLVAM-VLMVMIVTALSGYQRVLMHSFALRHQYLQIWRQAWQQTALYP 62 # # Query: 73 FGEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTTSLTR 124 # F + +W+++ + + ++T+ PSG+ +TR # Sbjct: 63 FSPAD--------------DWKANRMQTTQSGCVSISVTMVSPSGRQGQMTR 100 # # # >NMB0887 # Length = 204 # # Score = 30.8 bits (68), Expect = 0.92 # Identities = 17/54 (31%), Positives = 28/54 (51%) # # Query: 15 NKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNETLALWIADNQLQ 68 # + QSGM L+EVL+AM + T L L+S ++ +T+ I N ++ # Sbjct: 13 DSQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLME 66 # # # >PA4551 # Length = 185 # # Score = 30.4 bits (67), Expect = 1.0 # Identities = 20/75 (26%), Positives = 36/75 (47%), Gaps = 19/75 (25%) # # Query: 17 QSGMTLLEVLLAMSIFTAVALTLMSSMQGQ------------------RNAIERMRNETL 58 # QSG +++EVL+A+ + ++ + M +MQG+ N +E MR # Sbjct: 12 QSGFSMIEVLVAL-LLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPK 70 # # Query: 59 ALWIADNQLQSQDSF 73 # AL+ +Q+ +Q F # Sbjct: 71 ALYDVKDQMATQSDF 85 # # # >YPO0810 # Length = 198 # # Score = 30.0 bits (66), Expect = 1.4 # Identities = 12/26 (46%), Positives = 20/26 (76%) # # Query: 19 GMTLLEVLLAMSIFTAVALTLMSSMQ 44 # G TLLE+LLA+ IF+ ++ + SS++ # Sbjct: 8 GFTLLEMLLAVVIFSMISFIIYSSLR 33 # # # >mlr2360 # Length = 1176 # # Score = 30.0 bits (66), Expect = 1.7 # Identities = 9/17 (52%), Positives = 13/17 (75%) # # Query: 86 INGEEWNWRSDIHSSKD 102 # + G+EW WR D+ SS+D # Sbjct: 1006 MTGQEWTWRQDVRSSRD 1022 # # # >CC1604 # Length = 1398 # # Score = 29.3 bits (64), Expect = 2.8 # Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 8/74 (10%) # # Query: 52 RMRNETLALWIADNQLQSQDSFGEE----NTSSSGK-ELINGEEWNWRSDIHSSKDGTLL 106 # R+RN TL +ADN + + GE+ + S +G+ L G E N++ D+ S + L+ # Sbjct: 1039 RLRNVTLRSALADNAIDVSQAIGEDGEGGSISGAGRISLSRGGEGNFKLDMKSFR---LI 1095 # # Query: 107 ERTITVTLPSGQTT 120 # + + + +GQ + # Sbjct: 1096 DNDLASAVATGQAS 1109 # # # >alr0557_1 # Length = 270 # # Score = 28.9 bits (63), Expect = 3.1 # Identities = 14/36 (38%), Positives = 21/36 (57%), Gaps = 6/36 (16%) # # Query: 48 NAIERMRNETLAL------WIADNQLQSQDSFGEEN 77 # N ++ R E +A+ WIAD++LQ Q F +EN # Sbjct: 77 NTLQACRGEYIAILEGDDYWIADDKLQKQVEFLDEN 112 # # # >PA1009 # Length = 185 # # Score = 28.5 bits (62), Expect = 3.9 # Identities = 14/26 (53%), Positives = 17/26 (64%) # # Query: 104 TLLERTITVTLPSGQTTSLTRYQSID 129 # T+L TITVTLP+G S R Q +D # Sbjct: 141 TMLNATITVTLPAGTQISWLRDQFLD 166 # # # >RSp1290 # Length = 250 # # Score = 28.5 bits (62), Expect = 4.3 # Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 7/73 (9%) # # Query: 8 RQRYPPMNKQSGMTLLEVLLAMSI-------FTAVALTLMSSMQGQRNAIERMRNETLAL 60 # R+++ P +QSG +L+E+++AM I V + + S Q NE LAL # Sbjct: 7 RKQWRPAVRQSGTSLIELMIAMVISLVILSGVVVVFINMKQSFTNQDQLALLEDNERLAL 66 # # Query: 61 WIADNQLQSQDSF 73 # I QS F # Sbjct: 67 SILTGTAQSAGYF 79 # # # >ECs5117 # Length = 565 # # Score = 28.5 bits (62), Expect = 4.4 # Identities = 13/26 (50%), Positives = 19/26 (73%) # # Query: 19 GMTLLEVLLAMSIFTAVALTLMSSMQ 44 # G+T++ LLAMS+F + L L SS+Q # Sbjct: 247 GLTIVFTLLAMSMFGLLTLQLPSSLQ 272 # # # >ZdsbD # Length = 565 # # Score = 28.5 bits (62), Expect = 4.4 # Identities = 13/26 (50%), Positives = 19/26 (73%) # # Query: 19 GMTLLEVLLAMSIFTAVALTLMSSMQ 44 # G+T++ LLAMS+F + L L SS+Q # Sbjct: 247 GLTIVFTLLAMSMFGLLTLQLPSSLQ 272 # # # >VC2730 # Length = 146 # # Score = 28.1 bits (61), Expect = 6.1 # Identities = 13/44 (29%), Positives = 26/44 (58%) # # Query: 14 MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNET 57 # M KQ+G TLLEV++ + I +A ++ ++ G + ++ + T # Sbjct: 4 MRKQTGFTLLEVMVVVVILGILASFVVPNLLGNKEKADQQKAVT 47 # # # >NMB1606 # Length = 505 # # Score = 28.1 bits (61), Expect = 6.3 # Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%) # # Query: 3 PGSNARQRYPPMNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQ--RNAIERMRNETLAL 60 # PG NA R P+NK S L+ + S A AL++ + GQ N +RN A+ # Sbjct: 272 PGLNAGIRAVPVNKGSDKLLILYIRPQSEIQAEALSVKLAALGQLTANLAHEIRNPMSAI 331 # # Query: 61 WIADNQLQ 68 # A++ L+ # Sbjct: 332 RHANDLLR 339 # # # >PA0677 # Length = 213 # # Score = 28.1 bits (61), Expect = 6.3 # Identities = 26/89 (29%), Positives = 41/89 (45%), Gaps = 7/89 (7%) # # Query: 5 SNARQRYPPMNKQSGMTLLEVLLA---MSIFTAVALTLMSSMQGQRNAIERMRNETLALW 61 # S +R +Q+G TL+EV++A M+I + +A + S+ +E + AL # Sbjct: 2 SGYAERATTRRRQAGFTLIEVMVAIMLMAIVSLMAWRGLDSIARASAHLEDSTEQGAALL 61 # # Query: 62 IADNQLQS----QDSFGEENTSSSGKELI 86 # A NQL+ + EE SG E I # Sbjct: 62 RALNQLERDIALHSAIREETGLPSGDEPI 90 # # # >VC0858 # Length = 184 # # Score = 28.1 bits (61), Expect = 6.3 # Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 15/114 (13%) # # Query: 19 GMTLLEVLLAMSIFTAVALTLMSSMQ--GQRNAIERMRNETLALWIADNQLQSQDSFGEE 76 # G TLLE+L+ +++ T + L + Q+ + + NE I Q +S+ F + # Sbjct: 18 GFTLLELLITVAVLTTMLLFAAPNFSKVSQQTKMTNLANELQGFLI---QAKSEAVFRNQ 74 # # Query: 77 N--TSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLPSGQTTSLTRYQSI 128 # + G I G+ W+ + S D ++ + TV L GQ RYQ++ # Sbjct: 75 DLWVHIQGLPSITGQ---WQLVLSSVSDVAAIDASNTVALLQGQ-----RYQNV 120 # # # >SPAC16C9.06c # Length = 925 # # Score = 27.7 bits (60), Expect = 6.6 # Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 6/100 (6%) # # Query: 42 SMQGQRNAIERMRNETLALWIA-DNQLQSQDSFGEENTSSSGKELINGEEWNWRSDIHSS 100 # ++Q ER+ WI D+ L +FG+E S+SG +N E + I ++ # Sbjct: 648 TLQNGVTTSERIARHVDFPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTT 707 # # Query: 101 --KDGTLLERTITVTLPSGQTTSLTRYQSIDNKSGQAQDD 138 # + L E+ VT GQ + + +Y +G Q D # Sbjct: 708 FLRSNVLPEQIGIVTPYDGQRSYIVQYM---QNNGSMQKD 744 # # # >YPO0958 # Length = 499 # # Score = 27.3 bits (59), Expect = 9.0 # Identities = 12/24 (50%), Positives = 17/24 (70%) # # Query: 78 TSSSGKELINGEEWNWRSDIHSSK 101 # T SG+ +I+GEE N+ S IHS + # Sbjct: 56 TKDSGRIMIHGEEKNFTSPIHSKE 79 # # # >gspJ # Length = 195 # # Score = 27.3 bits (59), Expect = 9.9 # Identities = 11/24 (45%), Positives = 20/24 (82%) # # Query: 14 MNKQSGMTLLEVLLAMSIFTAVAL 37 # +N+Q G TLLEV+ A++IF+ +++ # Sbjct: 2 INRQQGFTLLEVMAALAIFSMLSV 25 # # Database: myva Posted date: Sep 16, 2002 2:25 PM Number of letters in database: 59,019,183 Number of sequences in database: 192,987 Lambda K H 0.310 0.124 0.342 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 14,214,993 Number of Sequences: 192987 Number of extensions: 475089 Number of successful extensions: 1107 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 1078 Number of HSP's gapped (non-prelim): 52 length of query: 138 length of database: 59,019,183 effective HSP length: 98 effective length of query: 40 effective length of database: 40,106,457 effective search space: 1604258280 effective search space used: 1604258280 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 59 (27.3 bits) S2: 59 (27.3 bits)
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