| wiew.cgi?COG4791 | 15 proteins | U | COG4791 | Type III secretory pathway, component EscT | Help |
|---|---|---|---|---|---|
| 3 from | query genome Escherichia coli O157:H7 (Enterobacteriales | Gammaproteobacteria) | ||||
| ECs3722 ECs3723 ECs4581 | |||||
78 letters (r) 0 0 280 = ||| 1 ECs3722 (78) = 0 0 280 = ||| 2 Z4186 (78) = 177 8
114 = ||| 11 STM2888 (263) = 180 3 79 = ||| 29 YPCD1.46 (261) = 180 1 79 = ||| 30 STM1421 (259) = 177 4 70 _ 39 BS_fliR (259) COG1684 191 13 65 = | 39 RSp0872 (282) = 180 1 64 _ 255 TM0910 (258) COG1684 178 2 61 = |||255 ECs4581 (258) = 178 2 61 = |||255 ZescT (258) = BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ECs3722 (78 letters) Database: myva 192,987 sequences; 59,019,183 total letters Score E Sequences producing significant alignments: (bits) Value ECs3722 112 2e-25 Z4186 112 2e-25 STM2888 49 3e-06 YPCD1.46 35 0.031 STM1421 35 0.036 BS_fliR 32 0.34 RSp0872 30 1.3 TM0910 29 1.7 ECs4581 28 3.8 ZescT 28 3.8
# >ECs3722 # Length = 78 # # Score = 112 bits (280), Expect = 2e-25 # Identities = 78/78 (100%), Positives = 78/78 (100%) # # Query: 1 MTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAE 60 # MTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAE # Sbjct: 1 MTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAE 60 # # Query: 61 RVMPLSFFPEQLQLYIEK 78 # RVMPLSFFPEQLQLYIEK # Sbjct: 61 RVMPLSFFPEQLQLYIEK 78 # # # >Z4186 # Length = 78 # # Score = 112 bits (280), Expect = 2e-25 # Identities = 78/78 (100%), Positives = 78/78 (100%) # # Query: 1 MTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAE 60 # MTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAE # Sbjct: 1 MTHTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAE 60 # # Query: 61 RVMPLSFFPEQLQLYIEK 78 # RVMPLSFFPEQLQLYIEK # Sbjct: 61 RVMPLSFFPEQLQLYIEK 78 # # # >STM2888 # Length = 263 # # Score = 48.5 bits (114), Expect = 3e-06 # Identities = 37/65 (56%), Positives = 51/65 (77%) # # Query: 3 HTIVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAERV 62 # + +V ASPV+ V+L E LGLL+R+A Q+NAFAISLTVKS +A LI+++YF P+L + V # Sbjct: 180 NALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTVKSGIAVLIMLLYFSPVLPDNV 239 # # Query: 63 MPLSF 67 # + LSF # Sbjct: 240 LRLSF 244 # # # >YPCD1.46 # Length = 261 # # Score = 35.0 bits (79), Expect = 0.031 # Identities = 20/48 (41%), Positives = 33/48 (68%) # # Query: 6 VYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIY 53 # V A+P++ M E L L++R+A LN F +++ +KSA+A L+L+IY # Sbjct: 186 VLAAPLLIAMFLAEFGLALISRFAPSLNVFVLAMPIKSAIASLLLVIY 233 # # # >STM1421 # Length = 259 # # Score = 35.0 bits (79), Expect = 0.036 # Identities = 22/50 (44%), Positives = 29/50 (58%) # # Query: 5 IVYASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYF 54 # I ++ P I M+ + LGLL R A QLN F S+ +KS L L L+I F # Sbjct: 185 ISFSLPAIICMVLADLALGLLNRSAQQLNVFFFSMPLKSILVLLTLLISF 234 # # # >BS_fliR # Length = 259 # # Score = 31.6 bits (70), Expect = 0.34 # Identities = 17/45 (37%), Positives = 31/45 (68%) # # Query: 8 ASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILII 52 # ++PV+A + + LG++AR QLN F + L +K A++F++LI+ # Sbjct: 185 SAPVVASLFLVDLALGIVARTVPQLNVFVVGLPLKIAVSFIMLIV 229 # # # >RSp0872 # Length = 282 # # Score = 29.6 bits (65), Expect = 1.3 # Identities = 17/44 (38%), Positives = 29/44 (65%) # # Query: 8 ASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILI 51 # A+PV+ ML +A +GLLAR A +L ++ +K A+A L+++ # Sbjct: 199 AAPVMMTMLLIDAGIGLLARAADKLEPTSLGQPIKGAVALLMVM 242 # # # >TM0910 # Length = 258 # # Score = 29.3 bits (64), Expect = 1.7 # Identities = 22/58 (37%), Positives = 34/58 (57%), Gaps = 1/58 (1%) # # Query: 9 SPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILIIYFGPILAERVMPLS 66 # +PVIA ML VLG+++R Q+N F + L +K + +ILI+ PI A+ +S # Sbjct: 189 APVIAFMLIISIVLGIVSRLIPQMNVFMVGLPLKVIIG-VILILGMLPIWADMAQKIS 245 # # # >ECs4581 # Length = 258 # # Score = 28.1 bits (61), Expect = 3.8 # Identities = 17/46 (36%), Positives = 27/46 (57%) # # Query: 7 YASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILII 52 # ++ P+I + + G L + A QLN F +SL VKS +A IL++ # Sbjct: 185 FSVPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLL 230 # # # >ZescT # Length = 258 # # Score = 28.1 bits (61), Expect = 3.8 # Identities = 17/46 (36%), Positives = 27/46 (57%) # # Query: 7 YASPVIAVMLGGEAVLGLLARYASQLNAFAISLTVKSALAFLILII 52 # ++ P+I + + G L + A QLN F +SL VKS +A IL++ # Sbjct: 185 FSVPMIIGIFLCDMGFGFLNKTAPQLNVFTLSLPVKSLIAIFILLL 230 # # Database: myva Posted date: Sep 16, 2002 2:25 PM Number of letters in database: 59,019,183 Number of sequences in database: 192,987 Lambda K H 0.330 0.143 0.396 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 7,871,666 Number of Sequences: 192987 Number of extensions: 232157 Number of successful extensions: 1064 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 14 Number of HSP's that attempted gapping in prelim test: 1033 Number of HSP's gapped (non-prelim): 45 length of query: 78 length of database: 59,019,183 effective HSP length: 54 effective length of query: 24 effective length of database: 48,597,885 effective search space: 1166349240 effective search space used: 1166349240 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 58 (26.9 bits) S2: 58 (26.9 bits)
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