| wiew.cgi?COG2165 | 88 proteins | NU | COG2165 | Type II secretory pathway, pseudopilin PulG | Help |
|---|---|---|---|---|---|
| 4 from | query genome Deinococcus radiodurans (Deinococcales | Deinococci) | ||||
| 1 BUDs | ( DR0546 DR0548 ) DR1232 DR1233 | ||||
186 letters (r) 0 0 827 = ||| 1 DR1233 (186) = 38 -17 83 = 55 all0563 (207) = -8 17 81 _ 8 gspJ (195) COG4795 148 -20 81 = ||| 49 DR0548 (314) = 5 -9 79 = 31 all1765 (185) = -9 -20 79 = 39 TM1271 (157) = 6 -18 79 = 56 RSp0142 (172) = -5 -19 78 _ 57 NMB0890 (162) COG4969 -5 -19 78 _ 58 NMA1110 (162) COG4969 -3 -25 77 _ 56 YPO3425 (154) COG4969 6 -24 75 = 70 sll1694 (168) = 1 21 74 _ 15 PA0677 (213) COG4795 7 145 73 16 all1770 (340) 7 -27 72 _ 3 XF1520 (168) COG4970 -6 -25 72 = 74 VC2730 (146) = 3 -36 71 = 72 PA0681 (149) = -8 -49 71 _ 67 NMA0726 (129) COG4968 -8 -49 71 _ 66 NMB0547 (129) COG4968 -8 -16 69 = 37 VC0410 (162) = 11 -14 69 = 39 slr1929 (183) = -1 -31 69 = 85 PA3101 (148) = -2 -21 69 = ||| 45 DR1232 (154) = 5 -17 69 = 52 RSc2302 (172) = -8 -11 68 = ||| 43 DR0546 (125) = -9 -2 68 = 70 VC0502 (174) = -9 -69 67 = 22 BH2825 (108) = -8 -8 67 _ 104 NMB0018 (170) COG4969 -9 -69 67 = 35 PA3099 (129) = -6 -57 67 = 21 CPn0818 (123) = 0 -34 66 = 25 RSc3108 (135) = -8 -8 66 _ 111 NMA0264 (170) COG4969 274 110 66 _ 255 CAC1387 (571) COG0840 25 -14 65 10 slr1928 (194) 7 -37 65 = 85 RSc3106 (156) = 2 50 65 = 18 all1771 (238) = -12 22 65 _ 38 CC0179 (196) COG4795 -9 5 65 _ 54 XF0966 (185) COG4970 -7 -33 65 = 85 YPO0813 (145) = -9 -53 64 = 85 CAC2103 (120) = -9 66 64 _ 255 PA3098 (237) COG4795 8 -24 64 = 85 sll1695 (170) = 3 -42 63 _ 86 VC0857 (147) COG4968 157 -54 63 _ 255 ECs1652 (296) COG3546 157 -54 63 _ 255 Z1921 (296) COG3546 400 109 62 _ 255 BH3903 (695) COG0840 -4 59 62 _ 255 RSc3109 (240) COG4795 -11 -4 62 = 62 Cj1343c (171) = 129 -102 62 _ 255 Rv0825c (213) COG1309 155 -102 62 _ 255 MT0847 (239) COG1309 BLASTP 2.2.4 [Aug-26-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DR1233 (186 letters) Database: myva 192,987 sequences; 59,019,183 total letters Score E Sequences producing significant alignments: (bits) Value DR1233 323 2e-88 all0563 37 0.036 gspJ 36 0.051 DR0548 36 0.057 all1765 35 0.085 TM1271 35 0.089 RSp0142 35 0.094 NMB0890 35 0.13 NMA1110 35 0.13 YPO3425 34 0.15 sll1694 33 0.28 PA0677 33 0.33 all1770 33 0.52 XF1520 32 0.64 VC2730 32 0.65 PA0681 32 0.69 NMA0726 32 0.72 NMB0547 32 0.81 VC0410 31 1.3 slr1929 31 1.4 PA3101 31 1.4 DR1232 31 1.4 RSc2302 31 1.4 DR0546 31 1.9 VC0502 31 1.9 BH2825 30 2.2 NMB0018 30 2.4 PA3099 30 2.4 CPn0818 30 2.5 RSc3108 30 2.6 NMA0264 30 2.9 CAC1387 30 3.0 slr1928 30 3.4 RSc3106 30 3.8 all1771 30 3.8 CC0179 30 3.9 XF0966 30 3.9 YPO0813 30 4.1 CAC2103 29 4.6 PA3098 29 5.0 sll1695 29 5.3 VC0857 29 6.0 ECs1652 29 7.1 Z1921 29 7.1 BH3903 28 7.6 RSc3109 28 7.8 Cj1343c 28 8.2 Rv0825c 28 8.5 MT0847 28 8.9
# >DR1233 # Length = 186 # # Score = 323 bits (827), Expect = 2e-88 # Identities = 186/186 (100%), Positives = 186/186 (100%) # # Query: 1 MGFQDKGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQ 60 # MGFQDKGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQ # Sbjct: 1 MGFQDKGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQ 60 # # Query: 61 GVLENVRAAWKTQSNYDNACAPGVTLPSGYSIKFINLNSRAAPLKADGTLWQAPDPNPTK 120 # GVLENVRAAWKTQSNYDNACAPGVTLPSGYSIKFINLNSRAAPLKADGTLWQAPDPNPTK # Sbjct: 61 GVLENVRAAWKTQSNYDNACAPGVTLPSGYSIKFINLNSRAAPLKADGTLWQAPDPNPTK 120 # # Query: 121 AGPPSNTVNVQATCTAATGAQVGSGTALSVPAMRRLVVQSGTTGTNGTQVVGPQDFSLTV 180 # AGPPSNTVNVQATCTAATGAQVGSGTALSVPAMRRLVVQSGTTGTNGTQVVGPQDFSLTV # Sbjct: 121 AGPPSNTVNVQATCTAATGAQVGSGTALSVPAMRRLVVQSGTTGTNGTQVVGPQDFSLTV 180 # # Query: 181 DVLRPQ 186 # DVLRPQ # Sbjct: 181 DVLRPQ 186 # # # >all0563 # Length = 207 # # Score = 36.6 bits (83), Expect = 0.036 # Identities = 15/38 (39%), Positives = 28/38 (73%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQ 50 # E+GFT+IE+LV + ++G+L A+ +L G ++ +QS+ # Sbjct: 51 EEGFTLIELLVVVIIIGVLAAIALPSLLGQVNKAKQSE 88 # # # >gspJ # Length = 195 # # Score = 35.8 bits (81), Expect = 0.051 # Identities = 14/48 (29%), Positives = 32/48 (66%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQ 60 # +QGFT++E++ A+A+ +L+ + + + L+++SQK++ Q+Q # Sbjct: 5 QQGFTLLEVMAALAIFSMLSVLAFMIFSQASELHQRSQKEIQQFNQLQ 52 # # # >DR0548 # Length = 314 # # Score = 35.8 bits (81), Expect = 0.057 # Identities = 19/39 (48%), Positives = 26/39 (65%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQ 52 # QGFT+IE+L+ IA++GIL AVL L G+ + S Q # Sbjct: 162 QGFTLIELLIVIAIIGILAAVLIPNLLGARAKANDSATQ 200 # # # >all1765 # Length = 185 # # Score = 35.0 bits (79), Expect = 0.085 # Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 3/99 (3%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTA---TLTGSLSLNRQSQKQLDTTTQVQGVLENVRAA 69 # E+GFT+ EIL I ++GIL A+ T + LN+ + + Q Q + # Sbjct: 18 ERGFTLPEILAVILMVGILAALALPYWLTFVDTQRLNKAQYEVHNAIRQAQSQASKEKLT 77 # # Query: 70 WKTQSNYDNACAPGVTLPSGYSIKFINLNSRAAPLKADG 108 # W+ N P+ S N N+ + ++ DG # Sbjct: 78 WQASFREQNGIVQWAVHPASVSPTNANWNNLDSRVRLDG 116 # # # >TM1271 # Length = 157 # # Score = 35.0 bits (79), Expect = 0.089 # Identities = 19/63 (30%), Positives = 34/63 (53%) # # Query: 15 GFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVRAAWKTQS 74 # GFT+IE+L+ +A++ L AVL T TG++ R ++ + QG+ + + A # Sbjct: 6 GFTLIELLIVMAIIAALMAVLIPTATGAMRKARATRIAVQLRNLEQGIEQYLMATLPATE 65 # # Query: 75 NYD 77 # + D # Sbjct: 66 DVD 68 # # # >RSp0142 # Length = 172 # # Score = 35.0 bits (79), Expect = 0.094 # Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 2/40 (5%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQL 53 # QGFT+IE+LV +A+LG+L L A +S+ R +++L # Sbjct: 20 QGFTLIELLVTLAILGVLA--LIAVPVAQVSMQRTREQEL 57 # # # >NMB0890 # Length = 162 # # Score = 34.7 bits (78), Expect = 0.13 # Identities = 13/42 (30%), Positives = 28/42 (65%) # # Query: 9 SKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQ 50 # +K+ ++GFT+IE+++ +A+LGI++ + + + QSQ # Sbjct: 4 NKMEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQ 45 # # # >NMA1110 # Length = 162 # # Score = 34.7 bits (78), Expect = 0.13 # Identities = 13/42 (30%), Positives = 28/42 (65%) # # Query: 9 SKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQ 50 # +K+ ++GFT+IE+++ +A+LGI++ + + + QSQ # Sbjct: 4 NKMEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQ 45 # # # >YPO3425 # Length = 154 # # Score = 34.3 bits (77), Expect = 0.15 # Identities = 28/94 (29%), Positives = 47/94 (49%), Gaps = 10/94 (10%) # # Query: 6 KGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLE- 64 # K Q ++GFT+IE++VA+A++ +L+ + G S R QK T +Q ++ # Sbjct: 3 KHQGLTLQKGFTLIELMVAVAIIAVLSGI------GIPSYQRYIQKAA-LTDMLQAIVPY 55 # # Query: 65 --NVRAAWKTQSNYDNACAPGVTLPSGYSIKFIN 96 # V QSN D+ A +P+G ++IN # Sbjct: 56 KMAVELCALEQSNLDSCNAGSNGIPAGQVSRYIN 89 # # # >sll1694 # Length = 168 # # Score = 33.5 bits (75), Expect = 0.28 # Identities = 15/38 (39%), Positives = 25/38 (65%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQ 50 # E GFT+IE+LV + ++G+L A+ L G + R+S+ # Sbjct: 19 EGGFTLIELLVVVIIIGVLAAIALPNLLGQVGKARESE 56 # # # >PA0677 # Length = 213 # # Score = 33.1 bits (74), Expect = 0.33 # Identities = 29/118 (24%), Positives = 57/118 (47%), Gaps = 19/118 (16%) # # Query: 2 GFQDKGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQG 61 # G+ ++ ++ + GFT+IE++VAI L+ I++ + G S+ R S D+T Q # Sbjct: 3 GYAERATTRRRQAGFTLIEVMVAIMLMAIVSLM---AWRGLDSIARASAHLEDSTEQGAA 59 # # Query: 62 VLE---------NVRAAWKTQSNYDNACAP---GVTLPSGYSIKFINLNSRAAPLKAD 107 # +L + +A + ++ + P G +LP G ++K ++ PL+ D # Sbjct: 60 LLRALNQLERDIALHSAIREETGLPSGDEPIRAGDSLPPGLALKRLS----EIPLRLD 113 # # # >all1770 # Length = 340 # # Score = 32.7 bits (73), Expect = 0.52 # Identities = 16/61 (26%), Positives = 37/61 (60%), Gaps = 2/61 (3%) # # Query: 8 QSKVYEQ--GFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLEN 65 # +SK+ E+ GF++IE+LVA+ L ++ L + ++ +RQ Q ++ + ++Q ++ # Sbjct: 15 RSKLIEEVGGFSLIELLVAMILAVLVITPLMGFMISVMNADRQEQAKVSSEQEIQAAVDY 74 # # Query: 66 V 66 # + # Sbjct: 75 I 75 # # # >XF1520 # Length = 168 # # Score = 32.3 bits (72), Expect = 0.64 # Identities = 18/53 (33%), Positives = 32/53 (59%), Gaps = 2/53 (3%) # # Query: 3 FQDKGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLS--LNRQSQKQL 53 # FQ + V+ QG +++E+L+ IAL+ +++ + A L+G + R S KQL # Sbjct: 10 FQTSSGASVHAQGVSLLEMLLVIALIALISLLGVAVLSGGMDGVQLRNSGKQL 62 # # # >VC2730 # Length = 146 # # Score = 32.3 bits (72), Expect = 0.65 # Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 9/70 (12%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVRAAWKT 72 # + GFT++E++V + +LGIL + + L G N++ Q T + LEN +K # Sbjct: 7 QTGFTLLEVMVVVVILGILASFVVPNLLG----NKEKADQQKAVTDIVA-LENALDMYK- 60 # # Query: 73 QSNYDNACAP 82 # DN+ P # Sbjct: 61 ---LDNSVYP 67 # # # >PA0681 # Length = 149 # # Score = 32.0 bits (71), Expect = 0.69 # Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQ-VQGVLENVRAAWK 71 # ++GFT+IEI+V + +LGIL A++ + L+R Q + Q + G+++ ++ # Sbjct: 16 QRGFTLIEIMVVVVILGILAAMVVPKV-----LDRPDQARATAARQDISGLMQALKLYRL 70 # # Query: 72 TQSNY 76 # Q Y # Sbjct: 71 DQGRY 75 # # # >NMA0726 # Length = 129 # # Score = 32.0 bits (71), Expect = 0.72 # Identities = 12/25 (48%), Positives = 22/25 (88%) # # Query: 10 KVYEQGFTIIEILVAIALLGILTAV 34 # K ++GFT++E+++A+A+LGILT + # Sbjct: 2 KNVQKGFTLLELMIAVAILGILTLI 26 # # # >NMB0547 # Length = 129 # # Score = 32.0 bits (71), Expect = 0.81 # Identities = 12/25 (48%), Positives = 22/25 (88%) # # Query: 10 KVYEQGFTIIEILVAIALLGILTAV 34 # K ++GFT++E+++A+A+LGILT + # Sbjct: 2 KNVQKGFTLLELMIAVAILGILTLI 26 # # # >VC0410 # Length = 162 # # Score = 31.2 bits (69), Expect = 1.3 # Identities = 16/35 (45%), Positives = 23/35 (65%) # # Query: 10 KVYEQGFTIIEILVAIALLGILTAVLTATLTGSLS 44 # K+ +GFT+IE++V I LLGIL+A + G S # Sbjct: 2 KIIGKGFTLIELVVVIILLGILSAYAASRFLGPSS 36 # # # >slr1929 # Length = 183 # # Score = 31.2 bits (69), Expect = 1.4 # Identities = 22/75 (29%), Positives = 36/75 (47%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVRAAWKTQ 73 # QG+T+IEI V ++GIL A+ +L G + N+ + ++ VQ N T # Sbjct: 25 QGWTLIEIGVVTVIVGILAAMAFPSLAGIQARNQVRSRMIEVRAAVQEAQRNAIKRGATC 84 # # Query: 74 SNYDNACAPGVTLPS 88 # + + A V LP+ # Sbjct: 85 TVTIDVAARSVRLPT 99 # # # >PA3101 # Length = 148 # # Score = 31.2 bits (69), Expect = 1.4 # Identities = 37/144 (25%), Positives = 60/144 (40%), Gaps = 12/144 (8%) # # Query: 4 QDKGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVL 63 # Q + + + GFT+IEI+V + +LGIL A++ + ++R Q ++ T +G + # Sbjct: 3 QSRPLQRRQQSGFTLIEIMVVVVILGILAALVVPQV-----MSRPDQAKV---TVAKGDI 54 # # Query: 64 ENVRAAWKTQSNYDNACAPGVTLPSGYSIKFINLNSRAAPLKADGTLWQAP-DP--NPTK 120 # + + AA DN P +K N + DG L + P DP NP + # Sbjct: 55 KAIAAALDMY-KLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQ 113 # # Query: 121 AGPPSNTVNVQATCTAATGAQVGS 144 # P A G + GS # Sbjct: 114 YLAPGTKGPFDLYSLGADGKEGGS 137 # # # >DR1232 # Length = 154 # # Score = 31.2 bits (69), Expect = 1.4 # Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%) # # Query: 4 QDKGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVL 63 # +D+GQS G T+IE+LV IA++GIL + L S+ ++ + + TQV L # Sbjct: 2 KDRGQS-----GMTLIELLVVIAIIGILMGLFGWNLVRSI----RAAELREAATQVAVDL 52 # # Query: 64 ENVRAAWKTQSNYDNACAPGVT 85 # R+ + S PG T # Sbjct: 53 RQARSQAQRGSRDIVVVLPGST 74 # # # >RSc2302 # Length = 172 # # Score = 31.2 bits (69), Expect = 1.4 # Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%) # # Query: 6 KGQSKVYEQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQL 53 # +G++ GFT+IE+++ +AL+GI+ + L++ RQ ++ L # Sbjct: 11 RGRANCRGHGFTLIELVITLALVGIVAMAIVP--LSELAVQRQKEQAL 56 # # # >DR0546 # Length = 125 # # Score = 30.8 bits (68), Expect = 1.9 # Identities = 40/155 (25%), Positives = 62/155 (39%), Gaps = 48/155 (30%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVRAAWKTQ 73 # + FT+IE+LV + ++ IL +VL +L G+ S K D+ T # Sbjct: 6 EAFTLIELLVVMTIIAILISVLVPSLAGARS------KAYDSAT---------------- 43 # # Query: 74 SNYDNACAPGVTLPSGYSIKFINLNSRAAPLKADGTLWQAPDPNPTKAGPPSNTVNVQAT 133 # ++Y CA + + + L P P PT P+ VN Q+ # Sbjct: 44 TSYLRHCASALEI-------------------SRDDLGVLPSPPPTSCEDPALGVNAQSK 84 # # Query: 134 CTAATGAQV---GSGTALSVPAMRRLVVQSGTTGT 165 # + +QV SGTA ++ A+ QSG T T # Sbjct: 85 PASVKQSQVTVTSSGTAYTISALS----QSGKTFT 115 # # # >VC0502 # Length = 174 # # Score = 30.8 bits (68), Expect = 1.9 # Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 1/50 (2%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVL 63 # QGFT+IE+++AI +LG++ AV+ A ++S + ++ L ++ L # Sbjct: 5 QGFTLIELIIAIVILGVI-AVIAAPRFINISKDAKANTMLSVAAGMESAL 53 # # # >BH2825 # Length = 108 # # Score = 30.4 bits (67), Expect = 2.2 # Identities = 12/22 (54%), Positives = 18/22 (81%) # # Query: 14 QGFTIIEILVAIALLGILTAVL 35 # +G+T+IE+LVA+ L I+TA L # Sbjct: 5 KGYTLIEVLVALVCLSIMTAAL 26 # # # >NMB0018 # Length = 170 # # Score = 30.4 bits (67), Expect = 2.4 # Identities = 12/22 (54%), Positives = 20/22 (90%) # # Query: 13 EQGFTIIEILVAIALLGILTAV 34 # ++GFT+IE+++ IA++GIL AV # Sbjct: 5 QKGFTLIELMIVIAIVGILAAV 26 # # # >PA3099 # Length = 129 # # Score = 30.4 bits (67), Expect = 2.4 # Identities = 27/81 (33%), Positives = 43/81 (52%), Gaps = 21/81 (25%) # # Query: 14 QGFTIIEILVAIALLGILTA-VLTA--------------TLTGSLSLNRQSQKQLDTTT- 57 # +GFT++E+LVA+A+ ++ A VL+A TL ++ NR ++ QL+ T # Sbjct: 5 RGFTLLEVLVALAIFAMVAASVLSASARSLQNASRLEDKTLAMWIADNRLNELQLEQTPP 64 # # Query: 58 ---QVQGVLE--NVRAAWKTQ 73 # + QG LE R W+TQ # Sbjct: 65 SSGRNQGELEFAGRRWEWRTQ 85 # # # >CPn0818 # Length = 123 # # Score = 30.4 bits (67), Expect = 2.5 # Identities = 13/40 (32%), Positives = 23/40 (57%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQ 52 # +Q T+IE++V I L+GI+ L + GS+ + Q + # Sbjct: 7 KQSITLIEMMVVITLIGIIGGALAFNMRGSIHKGKVFQSE 46 # # # >RSc3108 # Length = 135 # # Score = 30.0 bits (66), Expect = 2.6 # Identities = 32/108 (29%), Positives = 40/108 (36%), Gaps = 25/108 (23%) # # Query: 15 GFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVRAAWKTQS 74 # GFT++E+LVA L I+ LTAT+ S+ S+ L T EN A + # Sbjct: 15 GFTLLEVLVA---LTIVAVALTATMRAMGSMTVASE-SLQTRMLATWSAENHLAGLRLAH 70 # # Query: 75 NYDNACAPGVTLPSGYSIKFINLNSRAAPLKADGTLW----QAPDPNP 118 # Y G P G D LW AP PNP # Sbjct: 71 AYPEPGMRGFACPQG-----------------DAQLWCEETVAPTPNP 101 # # # >NMA0264 # Length = 170 # # Score = 30.0 bits (66), Expect = 2.9 # Identities = 12/22 (54%), Positives = 20/22 (90%) # # Query: 13 EQGFTIIEILVAIALLGILTAV 34 # ++GFT+IE+++ IA++GIL AV # Sbjct: 5 QKGFTLIELMIVIAIVGILAAV 26 # # # >CAC1387 # Length = 571 # # Score = 30.0 bits (66), Expect = 3.0 # Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%) # # Query: 125 SNTVNVQATCTAATGAQVGSGTALSVPAMRRLVVQSG--TTGTNGTQVVGPQD 175 # +N + + A AA +VG G A+ +RRL QS TG N T +V QD # Sbjct: 399 TNLLALNAAIEAARAGEVGKGFAVVAEEVRRLAEQSAESVTGINDT-IVKVQD 450 # # # >slr1928 # Length = 194 # # Score = 29.6 bits (65), Expect = 3.4 # Identities = 25/96 (26%), Positives = 48/96 (49%), Gaps = 13/96 (13%) # # Query: 13 EQGFTIIEILVAIA-----LLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVR 67 # +QGFT+ E+L+A+ L G L A++ AT+ + +++++ ++ LE VR # Sbjct: 38 QQGFTMFEVLIALMISFLFLTGTLNAMVMATV-----MRVKAEREAQAGYWIKEDLEQVR 92 # # Query: 68 AAWKTQSNYDNACAPGVTLPSGYSIKFINLNSRAAP 103 # A +N++ A G G + + N ++ A P # Sbjct: 93 A---LAANFNPATGNGCPTSVGETFRDANNSADADP 125 # # # >RSc3106 # Length = 156 # # Score = 29.6 bits (65), Expect = 3.8 # Identities = 12/22 (54%), Positives = 19/22 (85%) # # Query: 14 QGFTIIEILVAIALLGILTAVL 35 # +GFT+IEI+V + +LGIL A++ # Sbjct: 21 RGFTLIEIMVVVVILGILAALV 42 # # # >all1771 # Length = 238 # # Score = 29.6 bits (65), Expect = 3.8 # Identities = 18/55 (32%), Positives = 29/55 (52%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVR 67 # + GFTIIE LVAI ++ IL + L S + Q+++ T + ++ VR # Sbjct: 15 DSGFTIIESLVAIIVVAILLTAIAPVLVMSTATRVQARRVELATQAAKSFIDGVR 69 # # # >CC0179 # Length = 196 # # Score = 29.6 bits (65), Expect = 3.9 # Identities = 14/55 (25%), Positives = 34/55 (61%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVRA 68 # +GFT+IE++VA+ + ++TA A ++ +L+ + +++ ++Q + V+A # Sbjct: 2 KGFTLIEMMVALLIFALITAAGVAVMSSTLNNQTAVRVRVERYAELQRMRAVVKA 56 # # # >XF0966 # Length = 185 # # Score = 29.6 bits (65), Expect = 3.9 # Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 13/107 (12%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVRAAWKTQ 73 # +G+T+ E+L+ +AL+ +LTA+ +L R K ++Q G R A TQ # Sbjct: 5 RGYTLPELLITMALIALLTAIGLPFFKQTLERQRLENKMHLLSSQFAG----ARLAAITQ 60 # # Query: 74 --------SNYDNACAPGVTLPSGYSIKFINLNSRAAPLKADGTLWQ 112 # S DN C +G+ I + + + + P + L+Q # Sbjct: 61 QTPVSVCPSRGDNKCRQDSNWSNGW-ITYRDSSRKPQPTSSKAILYQ 106 # # # >YPO0813 # Length = 145 # # Score = 29.6 bits (65), Expect = 4.1 # Identities = 16/54 (29%), Positives = 32/54 (58%), Gaps = 1/54 (1%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVR 67 # +GFT++EI+V I +LG+L ++ +L + + Q QK + + ++ L+ R # Sbjct: 7 KGFTLLEIMVVIVILGLLASLTIPSLMSNKNRADQ-QKAVSDISALENALDMYR 59 # # # >CAC2103 # Length = 120 # # Score = 29.3 bits (64), Expect = 4.6 # Identities = 14/67 (20%), Positives = 36/67 (52%), Gaps = 6/67 (8%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSL-SLNRQSQKQLDTTTQVQGVLENVRAAWK 71 # ++GFT+IE++++++++ IL A+L + + N + K + V ++ ++ # Sbjct: 4 KRGFTLIELIISMSIIAILGAILVPNIYSYIRRANNEKAKDMAAL-----VFQSAMRSYM 58 # # Query: 72 TQSNYDN 78 # + +DN # Sbjct: 59 KEGKFDN 65 # # # >PA3098 # Length = 237 # # Score = 29.3 bits (64), Expect = 5.0 # Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 6/56 (10%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLDTTTQVQGVLENVRA 68 # ++GFT++E+L+AIA+ +L A+ T + S+ Q+ T Q Q + E VRA # Sbjct: 4 QRGFTLLELLIAIAIFALL-ALATYRMFDSVMQTDQA-----TRVQEQRMRELVRA 53 # # # >sll1695 # Length = 170 # # Score = 29.3 bits (64), Expect = 5.3 # Identities = 12/38 (31%), Positives = 25/38 (65%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQ 50 # ++GFT++E+LV + +LG+L A+ L + R+++ # Sbjct: 21 QRGFTLLELLVVVIILGVLGAMTLPNLFSQIGKAREAE 58 # # # >VC0857 # Length = 147 # # Score = 28.9 bits (63), Expect = 6.0 # Identities = 11/42 (26%), Positives = 24/42 (56%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLD 54 # +QG T+IE+++A+ ++G+L ++ T + + Q D # Sbjct: 16 QQGMTLIELMIAVVIVGVLASIAYPAYTNYVKEGHRKQAMAD 57 # # # >ECs1652 # Length = 296 # # Score = 28.9 bits (63), Expect = 7.1 # Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 7/73 (9%) # # Query: 64 ENVRAAWKTQSNYDNACAPGVTLPSGYSIKFINLNSRA-APLKADGT-LWQAPDPNPTKA 121 # E+VR +W + N+D P + G INL+++ A +KA T L D NP # Sbjct: 221 EDVRGSWNSDENFDYVSDPVSAVDGGDGKASINLSTKQEAMIKAMATRLKSHEDINPVTG 280 # # Query: 122 -----GPPSNTVN 129 # G P +N # Sbjct: 281 AELAEGEPQTKIN 293 # # # >Z1921 # Length = 296 # # Score = 28.9 bits (63), Expect = 7.1 # Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 7/73 (9%) # # Query: 64 ENVRAAWKTQSNYDNACAPGVTLPSGYSIKFINLNSRA-APLKADGT-LWQAPDPNPTKA 121 # E+VR +W + N+D P + G INL+++ A +KA T L D NP # Sbjct: 221 EDVRGSWNSDENFDYVSDPVSAVDGGDGKASINLSTKQEAMIKAMATRLKSHEDINPVTG 280 # # Query: 122 -----GPPSNTVN 129 # G P +N # Sbjct: 281 AELAEGEPQTKIN 293 # # # >BH3903 # Length = 695 # # Score = 28.5 bits (62), Expect = 7.6 # Identities = 15/48 (31%), Positives = 24/48 (49%) # # Query: 125 SNTVNVQATCTAATGAQVGSGTALSVPAMRRLVVQSGTTGTNGTQVVG 172 # +N + + A AA + G G A+ +R+L QS + TQ+VG # Sbjct: 525 TNLLALNAAIEAARAGEHGKGFAVVAEEVRKLAAQSAESADKITQLVG 572 # # # >RSc3109 # Length = 240 # # Score = 28.5 bits (62), Expect = 7.8 # Identities = 18/41 (43%), Positives = 26/41 (62%), Gaps = 1/41 (2%) # # Query: 14 QGFTIIEILVAIALLGILTAVLTATLTGSLSLNRQSQKQLD 54 # +GFT++E+LVAI LL IL AVL S++ ++ Q D # Sbjct: 10 RGFTLLELLVAITLLAIL-AVLAWRGLDSMTRTHEALAQRD 49 # # # >Cj1343c # Length = 171 # # Score = 28.5 bits (62), Expect = 8.2 # Identities = 11/30 (36%), Positives = 20/30 (66%) # # Query: 13 EQGFTIIEILVAIALLGILTAVLTATLTGS 42 # ++ FTI+E++ I +LGIL A+ ++ S # Sbjct: 2 KKAFTILELVFVIVILGILAAIALPKMSSS 31 # # # >Rv0825c # Length = 213 # # Score = 28.5 bits (62), Expect = 8.5 # Identities = 13/31 (41%), Positives = 20/31 (63%) # # Query: 18 IIEILVAIALLGILTAVLTATLTGSLSLNRQ 48 # +++ LVA +L+G LT + TA L G L R+ # Sbjct: 147 VLQKLVATSLIGALTGLFTAYLNGRLGATRK 177 # # # >MT0847 # Length = 239 # # Score = 28.5 bits (62), Expect = 8.9 # Identities = 13/31 (41%), Positives = 20/31 (63%) # # Query: 18 IIEILVAIALLGILTAVLTATLTGSLSLNRQ 48 # +++ LVA +L+G LT + TA L G L R+ # Sbjct: 173 VLQKLVATSLIGALTGLFTAYLNGRLGATRK 203 # # Database: myva Posted date: Sep 16, 2002 2:25 PM Number of letters in database: 59,019,183 Number of sequences in database: 192,987 Lambda K H 0.313 0.129 0.365 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,954,452 Number of Sequences: 192987 Number of extensions: 779252 Number of successful extensions: 2118 Number of sequences better than 10.0: 97 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 28 Number of HSP's that attempted gapping in prelim test: 2043 Number of HSP's gapped (non-prelim): 102 length of query: 186 length of database: 59,019,183 effective HSP length: 103 effective length of query: 83 effective length of database: 39,141,522 effective search space: 3248746326 effective search space used: 3248746326 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 62 (28.5 bits) S2: 62 (28.5 bits)
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